How-to guides

These guides describe how to use pygscatalog CLI applications.

Contents:

• How to download scoring files from the PGS Catalog
  • Installation
  • Usage
  • Help
• How to format scoring files from the PGS Catalog
  • Installation
  • Usage
  • Help
• How to match scoring file variants against target genomes
  • Installation
  • Usage
  • Help
• How to match variants across reference panels and target genomes
  • Installation
  • Usage
  • Help
• How to aggregate PGS split across multiple files
  • Installation
  • Usage
  • Help
• How to adjust PGS in the context of genetic ancestry
  • Installation
  • Usage
  • Help
• How to validate PGS Catalog scoring files
  • Installation
  • Usage
  • Help